rs6996346 chr8:27334719 G>A
- Sequence
tcatgcctggctcacacggagtga[G/A]ccagacagcgcttcctcattcccc
- ASB in cell types
- CD14+ monocytes GM12891 (male B- cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) A549 (lung carcinoma)
- ASB for transcription factors
- STAT1_HUMAN SPI1_HUMAN JUN_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 2.46 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 0.24 | 0.82 | 1.23 | n/a | No Hit | |||
| JUN_HUMAN | 0.02 | 1.27 | 1.94 | -2.36 | Discordant | |||
| CTCF_HUMAN | 2.14 | 1.20 | 1.21 | n/a | No Hit |
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Motif analysis
