rs6996936 chr8:143733407 G>C
- Sequence
gcgggagcgagtcgggacggccgg[G/C]caggctcgacccggatcccgggcc
- ASB in cell types
- K562 (myelogenous leukemia) SYO-1(Biphasic synovial sarcoma) HeLa (cervical adenocarcinoma) HCC1806(Squamous cell breast carcinoma, acantholytic variant)
- ASB for transcription factors
- ESR1_HUMAN KDM2B_HUMAN CATA_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.51 | 1.24 | 1.64 | n/a | No Hit | |||
| KDM2B_HUMAN | -0.57 | 2.09 | 1.00 | n/a | n/a | |||
| CATA_HUMAN | n/a | 2.18 | 2.00 | n/a | n/a | |||
| BRD2_HUMAN | 0.49 | 1.29 | 1.33 | n/a | n/a | |||
| NR2C1_HUMAN | 1.33 | -4.16 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid