rs6997696 chr8:27274625 C>T
- Sequence
agccggctgagctcctcgggcgcc[C/T]gtcctgcatacccggaccttctgg
- ASB in cell types
- HEK293 (embryonic kidney) WA09 (embryonic stem cells) SUM159PT (Triple negative breast cancer) HS578T (invasive ductal breast carcinoma)
- ASB for transcription factors
- TP53B_HUMAN SMAD3_HUMAN SMAD2_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TP53B_HUMAN | 3.02 | -3.16 | 1.00 | n/a | n/a | |||
| SMAD3_HUMAN | -0.84 | 1.97 | 1.00 | n/a | No Hit | |||
| SMAD2_HUMAN | -1.24 | 1.82 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.80 | -0.36 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Testis, Thyroid, Whole_Blood