rs7000458 chr8:11416880 A>C
- Sequence
agggtgtgtgtaaacggagtttac[A/C]ccctttccaaacataagagagacg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN COT1_HUMAN IKZF2_HUMAN BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.45 | n/a | 1.75 | n/a | n/a | |||
| COT1_HUMAN | 2.73 | n/a | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.35 | -3.31 | 1.50 | n/a | n/a | |||
| BHE40_HUMAN | 2.86 | n/a | 1.33 | n/a | No Hit | |||
| ATF7_HUMAN | 2.62 | -2.34 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Skin_Sun_Exposed_Lower_leg, Thyroid