rs7000625 chr8:11416962 A>T
- Sequence
acgtcaccagccatgggtcagggc[A/T]cctggccacgctcagcagggcacc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN IKZF1_HUMAN ATF7_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.46 | n/a | 1.50 | 0.70 | Weak Discordant | |||
| IKZF1_HUMAN | 2.90 | n/a | 1.75 | n/a | n/a | |||
| ATF7_HUMAN | 2.96 | -3.10 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.90 | -3.17 | 1.50 | n/a | n/a | |||
| ZN687_HUMAN | 2.33 | -4.06 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hypothalamus, Skin_Sun_Exposed_Lower_leg, Thyroid