rs7001706 chr8:128157512 G>C
- Sequence
tcagtgctgtgtgctgtttattca[G/C]aggaggccccaggacaggcttgtc
- ASB in cell types
- LNCaP (prostate carcinoma) HepG2 (hepatoblastoma) breast tumor LNCaP95
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN FOXA2_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.53 | 0.35 | 1.62 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.37 | 0.25 | 1.50 | -1.34 | Weak Concordant | |||
| FOXA2_HUMAN | 2.76 | -0.48 | 1.40 | -0.72 | Weak Concordant | |||
| GATA3_HUMAN | 3.20 | n/a | 2.00 | n/a | No Hit | |||
| TBP_HUMAN | 1.99 | 0.28 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
