rs7009973 chr8:23516941 A>G

Sequence
aggatgacttggccaccaacttcc[A/G]ggaatggagagacactgaaactaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
E4F1_HUMAN ELF4_HUMAN ATF3_HUMAN PKNX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
E4F1_HUMAN n/a 3.57 1.005.3·10-7 2.00 2.91 Concordant
ELF4_HUMAN n/a 3.36 1.003.3·10-5 2.00 5.69 Concordant
ATF3_HUMAN -1.39 2.31 1.007.8·10-3 2.00 n/a No Hit
PKNX1_HUMAN -1.24 1.30 1.000.04 1.50 n/a No Hit
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Motif analysis

E4F1_HUMAN Concordant
E4F1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  body mass index (bmi),  diastolic blood pressure (dbp),  infant head circumference,  ldl cholesterol,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Nerve_Tibial,  Pancreas,  Testis

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