rs7017797 chr8:11416972 G>C

Sequence
ccatgggtcagggcacctggccac[G/C]ctcagcagggcaccagcagctaat
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
COT1_HUMAN IKZF1_HUMAN IKZF2_HUMAN ZN687_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
COT1_HUMAN 3.57 n/a 1.0·10-91.00 1.50 n/a No Hit
IKZF1_HUMAN 2.69 -3.97 1.3·10-61.00 1.75 n/a n/a
IKZF2_HUMAN 1.77 -1.42 5.4·10-31.00 1.50 n/a n/a
ZN687_HUMAN 2.29 -3.97 5.5·10-31.00 1.50 n/a n/a
ATF7_HUMAN 2.70 -2.57 6.3·10-31.00 1.00 n/a No Hit
Items per page:
1 – 5 of 6

Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol change with statins,  total cholesterol change with statins,  years of education
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Hypothalamus,  Thyroid

Download