rs7021463 chr9:35657862 C>G

Sequence
cgcgccacgccgctcagcgggata[C/G]gcttcttggcggactttggagtgg
ASB in cell types
BEAS-2B (bronchial epithelium) 22RV1 (prostate carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
GCR_HUMAN ANDR_HUMAN EGR1_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 2.53 -1.95 5.0·10-61.00 1.00 n/a No Hit
ANDR_HUMAN 3.75 n/a 3.4·10-51.00 2.00 n/a No Hit
EGR1_HUMAN -0.81 2.36 1.001.8·10-3 1.00 n/a No Hit
TF65_HUMAN 0.90 0.33 0.021.00 2.14 n/a No Hit
EP300_HUMAN 1.06 -0.21 0.021.00 1.30 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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