rs7023191 chr9:76402084 A>C

Sequence
cagatgagggctacagttgtcttc[A/C]gtggttaacttttgtccttccggg
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN -0.12 2.73 1.007.7·10-7 2.20 4.07 Concordant
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Motif analysis

GABPA_HUMAN Concordant
GABPA_HUMAN pic

Genetic associations

GRASP hdl cholesterol,  ldl cholesterol
GTEx eQTL Adrenal_Gland,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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