rs7025554 chr9:93136249 C>T

Sequence
caggctgcagcgctggagttccct[C/T]gtctgctccgtcatcctcatttga
ASB in cell types
22RV1 (prostate carcinoma) CD14+ monocytes
ASB for transcription factors
ANDR_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.77 -5.29 0.021.00 2.00 n/a No Hit
STAT1_HUMAN 1.61 n/a 0.041.00 3.00 2.43 Discordant
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Motif analysis

STAT1_HUMAN Discordant
STAT1_HUMAN pic

Genetic associations

GRASP body mass index (bmi),  height,  sporadic creutzfeldt-jakob disease
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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