rs7027501 chr9:86997309 T>C
- Sequence
gacccacaattctgcatgaatctt[T/C]ccaggacactgaattggagccagc
- ASB in cell types
- HeLa S3 (cervical adenocarcinoma) RH4 (alveolar rhabdomyosarcoma) glioblastoma patient-derived cell model
- ASB for transcription factors
- CTCF_HUMAN CENPA_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.21 | -0.57 | 1.50 | n/a | No Hit | |||
| CENPA_HUMAN | 3.03 | -5.36 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 2.48 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi) (within family tests max measurement), body mass index (bmi) (within family tests), hdl cholesterol, irritible bowel syndrome, lp-pla2 activity, tardive dyskinesia
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Uterus