rs704347 chr4:2468886 A>G

Sequence
ccctcagaccgtgactcccgaaaa[A/G]ccttgcgggcggggcgcgcccgcg
ASB in cell types
K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) UCLA1 hESCs
ASB for transcription factors
ZN143_HUMAN AP2C_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN143_HUMAN n/a 2.66 1.001.9·10-4 2.00 1.82 Weak Concordant
AP2C_HUMAN -2.76 2.85 1.005.3·10-3 1.00 1.92 Weak Concordant
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Motif analysis

AP2C_HUMAN Weak Concordant
AP2C_HUMAN pic

Genetic associations

GRASP parkinsons disease,  years of education
GTEx eQTL Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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