rs705298 chr3:194554706 G>A

Sequence
agtgggagctgatggcagcccaac[G/A]cccagtctctttgtccacaccaac
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma)
ASB for transcription factors
ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.86 1.10 5.5·10-71.00 1.76 2.84 Discordant
Items per page:
1 – 1 of 1

Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

GRASP alzheimers disease,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid,  Whole_Blood

Download