rs705715 chr12:55926736 C>T
- Sequence
aggggaaaagaaggagggcaggaa[C/T]tggagggaaatgagagtgtagaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- SPI1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.56 | -0.63 | 1.00 | -2.29 | Concordant | |||
| CTCF_HUMAN | 0.69 | 0.63 | 1.15 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg