rs706931 chr6:110815399 T>C
- Sequence
caggcacccccagtcccgcctccc[T/C]ccttcatttccttgttttggaacc
- ASB in cell types
- BEAS-2B (bronchial epithelium) fetal bone marrow-derived mononuclear cells breast tumor LNCaP (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN KMT2A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.65 | -0.06 | 1.00 | n/a | No Hit | |||
| KMT2A_HUMAN | -4.89 | 2.92 | 1.50 | 0.94 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid