rs706932 chr6:110815595 C>G
- Sequence
ctcgggccaccacagcctcgcccc[C/G]acaaagcatgcgcgcctgcgtacc
- ASB in cell types
- BJ1-hTERT (Human fibroblast telomerase immortalized cell line) CD14+ monocytes MCF10A (breast epithelial cells) breast tumor
- ASB for transcription factors
- EGR1_HUMAN STAT1_HUMAN TEAD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | 3.33 | -3.67 | 1.00 | -4.99 | Concordant | |||
| STAT1_HUMAN | 3.45 | 1.01 | 1.50 | n/a | No Hit | |||
| TEAD4_HUMAN | 0.43 | 1.82 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Stomach, Testis, Thyroid