rs707847 chr6:16712377 A>G
- Sequence
cagtgaacatgcttgagtgaaaac[A/G]gccacgcaaggcagacagcaagtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) Kelly (neuroblastoma)
- ASB for transcription factors
- NFAC3_HUMAN ARNT_HUMAN HAND2_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFAC3_HUMAN | 2.95 | -2.69 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 3.02 | -3.01 | 1.00 | -0.41 | Weak Concordant | |||
| HAND2_HUMAN | 2.90 | n/a | 1.00 | -4.29 | Concordant | |||
| STAG1_HUMAN | 1.30 | 0.19 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.33 | -0.28 | 1.00 | n/a | n/a |
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Motif analysis
