rs708692 chr17:38734696 T>C

Sequence
gcaatttctggacattcaacaacg[T/C]ggggggcggccactggtcagaggc
ASB for transcription factors
GLIS1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GLIS1_HUMAN 1.99 n/a 0.021.00 2.00 0.78 Weak Discordant
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Motif analysis

GLIS1_HUMAN Weak Discordant
GLIS1_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  asthma,  height,  sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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