rs708766 chr1:226677553 A>C

Sequence
ccctggaacccacatccaccctga[A/C]tattgctggaggtactccctcttc
ASB in cell types
22RV1 (prostate carcinoma) breast tumor CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.73 n/a 5.2·10-41.00 2.00 n/a No Hit
ESR1_HUMAN 2.74 -5.07 6.4·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP autism,  breast cancer (hormonal receptor positive breast cancer),  hdl cholesterol,  late onset alzheimers disease,  maternal imprinting effects on cleft lip without cleft palate,  salmonella-induced pyroptosis,  triglycerides
GTEx eQTL Cells_Cultured_fibroblasts,  Testis,  Whole_Blood

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