rs709024 chr20:4221337 C>T
- Sequence
acctgagtccagcagggggcccca[C/T]tacttttcacctttcaagggctcc
- ASB in cell types
- T47D (invasive ductal carcinoma) GM02630 (Fanconi anemi) MS-1 (Small cell lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN MYCN_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.18 | 1.88 | 1.11 | n/a | n/a | |||
| MYCN_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.91 | 1.17 | 1.35 | 0.57 | Weak Concordant |
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Motif analysis
