rs7096745 chr10:67849547 C>A

Sequence
tcatactcagggacaccgtccccc[C/A]ctccgccccccgccctccgtaagt
ASB in cell types
K562 (myelogenous leukemia) pancreas CTV-1 (Adult T acute lymphoblastic leukemia) spleen
ASB for transcription factors
CTCF_HUMAN EP400_HUMAN SPI1_HUMAN ILF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.44 2.10 1.003.7·10-6 1.00 0.26 Weak Concordant
EP400_HUMAN -2.51 2.84 1.001.7·10-4 1.00 n/a n/a
SPI1_HUMAN 0.25 1.14 1.002.1·10-4 1.38 n/a No Hit
ILF3_HUMAN -2.18 2.71 1.004.9·10-4 1.00 n/a n/a
MNT_HUMAN -0.17 2.41 1.001.2·10-3 1.00 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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