rs710177 chr22:21629916 A>G
- Sequence
gaccagcagggacacgctggtcac[A/G]gccccggccagaaaggcctccacg
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte LNCaP C4-2B (prostate carcinoma) MV-4-11 (Childhood acute monocytic leukemia)
- ASB for transcription factors
- ZFX_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.79 | 0.37 | 1.25 | n/a | No Hit | |||
| CDK9_HUMAN | 1.81 | -1.25 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood