rs710220 chr1:42949675 G>T

Sequence
gagaggagggggctggtgcattta[G/T]cagcagcagcagcagcgagctgag
ASB in cell types
K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
MEIS2_HUMAN REQU_HUMAN KDM1A_HUMAN MNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MEIS2_HUMAN -2.80 3.18 1.004.1·10-7 1.00 4.35 Concordant
REQU_HUMAN -3.10 3.11 1.001.5·10-5 2.00 n/a n/a
KDM1A_HUMAN 0.21 2.88 1.002.1·10-5 2.33 n/a n/a
MNT_HUMAN -1.90 2.86 1.001.3·10-4 1.00 n/a No Hit
NCOR1_HUMAN n/a 2.65 1.003.4·10-4 3.50 n/a n/a
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Motif analysis

MEIS2_HUMAN Concordant
MEIS2_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  acute lung injury following major trauma,  fasting blood glucose,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Brain_Caudate_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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