rs711823 chr2:176125811 G>C
- Sequence
gcacccctgccactgtggccagct[G/C]ggtacctagggctctttgaaaaca
- ASB in cell types
- HT1080 (fibrosarcoma) COLO-320 (colon adenocarcinoma)
- ASB for transcription factors
- SSRP1_HUMAN TFAP4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSRP1_HUMAN | 0.09 | 3.27 | 1.00 | n/a | n/a | |||
| TFAP4_HUMAN | 3.12 | n/a | 1.50 | -4.87 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid