rs713074 chr1:209590628 A>G
- Sequence
aggccgtcattccatggaagctcc[A/G]gaagagggagtgatggacgcctgg
- ASB in cell types
- epithelial cell of prostate Peyer's patch T47D (invasive ductal carcinoma) neural cell
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.23 | -0.12 | 1.42 | -1.56 | Weak Concordant | |||
| RAD21_HUMAN | 2.98 | -0.14 | 1.12 | n/a | n/a | |||
| SMC3_HUMAN | 2.53 | -2.23 | 1.00 | n/a | n/a |
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Motif analysis
