rs713675 chr22:19779897 A>G

Sequence
ccctggctggcggctcccaggcgg[A/G]ggcaccacggtgaggccaagtgct
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KAISO_HUMAN ATF3_HUMAN OSR2_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KAISO_HUMAN n/a 1.49 1.009.6·10-4 4.00 n/a No Hit
ATF3_HUMAN n/a 3.41 1.002.5·10-3 4.00 n/a No Hit
OSR2_HUMAN n/a 2.55 1.004.6·10-3 2.00 n/a No Hit
KDM1A_HUMAN n/a 2.65 1.007.2·10-3 4.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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