rs713676 chr22:19779898 G>A

Sequence
cctggctggcggctcccaggcgga[G/A]gcaccacggtgaggccaagtgctg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KAISO_HUMAN NFIC_HUMAN ATF3_HUMAN OSR2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KAISO_HUMAN n/a 1.46 1.001.5·10-3 4.00 n/a No Hit
NFIC_HUMAN n/a 3.39 1.002.3·10-3 4.00 n/a No Hit
ATF3_HUMAN n/a 3.39 1.003.0·10-3 4.00 n/a No Hit
OSR2_HUMAN n/a 2.45 1.007.2·10-3 2.00 2.39 Concordant
KDM1A_HUMAN n/a 2.58 1.009.7·10-3 4.00 n/a n/a
Items per page:
1 – 5 of 5

Motif analysis

OSR2_HUMAN Concordant
OSR2_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

Download