rs713875 chr22:30196498 C>G
- Sequence
cgtcatcaccatcgcggtggccag[C/G]gtcagcgtttgacaaaggaagtac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) CTV-1 (Adult T acute lymphoblastic leukemia) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- MEF2B_HUMAN FOXA2_HUMAN PKNX1_HUMAN NFAC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MEF2B_HUMAN | 1.47 | 0.85 | 2.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.01 | 1.56 | 1.58 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.54 | -2.26 | 1.00 | n/a | No Hit | |||
| NFAC3_HUMAN | 2.56 | -2.35 | 1.00 | n/a | No Hit | |||
| ZHX2_HUMAN | 2.34 | 0.38 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP crohns disease, hdl cholesterol, lung cancer, rheumatoid arthritis, total cholesterol change with statins, ulcerative colitis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid