rs715333 chr11:9629203 C>G

Sequence
atacttggtttctgtcccctaccc[C/G]cctacagaaaccaccacggttaag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells
ASB for transcription factors
IKZF1_HUMAN NFAC3_HUMAN IKZF2_HUMAN RAD51_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN n/a 2.79 1.002.6·10-4 3.00 n/a n/a
NFAC3_HUMAN -2.55 2.79 1.006.1·10-3 1.00 n/a No Hit
IKZF2_HUMAN -3.95 1.50 1.000.01 2.00 n/a n/a
RAD51_HUMAN n/a 2.30 1.000.03 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  diastolic blood pressure (dbp),  microalbuminuria,  triglycerides
GTEx eQTL Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic

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