rs717427 chr8:3749009 A>C
- Sequence
gaatttcattttatgaaaattgta[A/C]ttttataaacagccgggtaaaggt
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.81 | 0.61 | 3.08 | 0.29 | Weak Discordant | |||
| ANDR_HUMAN | 1.18 | -0.61 | 1.88 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration (geographic atrophy), cystatin c in serum, ldl cholesterol, total cholesterol