rs7178458 chr15:101451568 T>C

Sequence
gcttctgactttgcaaaaaaaaac[T/C]gtactttatcactcccaaagcctg
ASB in cell types
K562 (myelogenous leukemia) adult erythroblasts AML (monocytes and acute myeloid leukemia)
ASB for transcription factors
RBBP5_HUMAN KDM6A_HUMAN MYB_HUMAN PHB2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBBP5_HUMAN n/a 3.27 1.002.0·10-5 2.50 n/a n/a
KDM6A_HUMAN n/a 3.22 1.001.5·10-3 2.50 n/a n/a
MYB_HUMAN -4.12 2.19 1.002.7·10-3 1.50 n/a No Hit
PHB2_HUMAN -5.41 3.23 1.000.01 2.00 n/a n/a
NCOA1_HUMAN -3.68 1.46 1.000.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP refractive error,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic

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