rs718341 chr13:110683382 C>A
- Sequence
aggcagtcttcccacctcaacctt[C/A]ccagtaggtggggctataggagtg
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM02610 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) GM18951 (B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 2.63 | 1.31 | 1.89 | Weak Concordant | |||
| STAG1_HUMAN | -1.49 | 2.52 | 1.25 | n/a | n/a | |||
| RAD21_HUMAN | 0.34 | 1.84 | 1.23 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg