rs7245624 chr19:3762928 G>A
- Sequence
ctagaactgatgcgcaagcgcaga[G/A]aggcggatgccaggctgtatgcgc
- ASB in cell types
- U87 (glioblastoma) primary B-CLL cells GM12878 (female B-cells lymphoblastoid cell line) LPS141 (Dedifferentiated liposarcoma)
- ASB for transcription factors
- BRD3_HUMAN ATF2_HUMAN IKZF1_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD3_HUMAN | 1.94 | -2.52 | 1.50 | n/a | n/a | |||
| ATF2_HUMAN | 2.79 | -0.13 | 1.25 | n/a | No Hit | |||
| IKZF1_HUMAN | 0.81 | -0.21 | 1.25 | n/a | n/a | |||
| ATF7_HUMAN | 1.95 | -2.35 | 1.25 | n/a | No Hit | |||
| TYY1_HUMAN | -0.07 | 2.97 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood