rs724916 chr6:17885171 C>T
- Sequence
catctcagaggaactggactgaaa[C/T]tgaaaggaaaccccagcaccaaga
- ASB in cell types
- MDM(monocyte derived macrophages) macrophages form periferal blood GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.31 | 2.08 | 2.00 | -0.53 | Weak Discordant | |||
| NFAC3_HUMAN | 2.54 | -2.26 | 1.00 | -1.10 | Weak Concordant |
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Motif analysis
