rs72633684 chr1:161612710 C>T

Sequence
tatatagatttctaaaattccaaa[C/T]cggggacgcgttggtggtgtagtg
ASB in cell types
K562 (myelogenous leukemia) neural cell breast tumor
ASB for transcription factors
SRBP2_HUMAN P66B_HUMAN MEF2D_HUMAN EP300_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 1.65 -1.65 6.4·10-41.00 1.00 n/a No Hit
P66B_HUMAN n/a 3.26 1.006.6·10-3 2.00 n/a n/a
MEF2D_HUMAN n/a 2.56 1.000.01 3.00 3.97 Concordant
EP300_HUMAN 0.45 2.57 1.000.01 1.50 n/a n/a
BCOR_HUMAN -4.88 2.79 1.000.04 2.00 n/a n/a
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Motif analysis

MEF2D_HUMAN Concordant
MEF2D_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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