rs726588 chr12:47730368 A>C

Sequence
ggaggttcagagagacagcgaggg[A/C]gtgagtaagggcgagatcaagaga
ASB in cell types
breast tumor BEAS-2B (bronchial epithelium) MCF10A (breast epithelial cells)
ASB for transcription factors
ESR1_HUMAN GCR_HUMAN NCOA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.75 0.12 4.4·10-41.00 1.88 n/a No Hit
GCR_HUMAN 2.46 -2.70 1.1·10-31.00 1.00 n/a No Hit
NCOA3_HUMAN 3.24 -3.04 2.3·10-31.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid,  Whole_Blood

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