rs72674051 chr1:44819746 C>G

Sequence
cgtcttctagagtcaagagactct[C/G]ccgccccagcttctccaataggtg
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZN282_HUMAN IKZF2_HUMAN ILF3_HUMAN SPT5H_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN282_HUMAN 2.05 -2.05 4.0·10-51.00 1.00 -6.47 Concordant
IKZF2_HUMAN 2.69 -2.37 1.9·10-41.00 1.00 n/a n/a
ILF3_HUMAN 1.30 -1.30 7.5·10-41.00 1.00 n/a n/a
SPT5H_HUMAN 0.48 -0.48 0.011.00 1.00 n/a n/a
IKZF1_HUMAN 1.31 -0.31 0.011.00 1.21 n/a n/a
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Motif analysis

ZN282_HUMAN Concordant
ZN282_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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