rs72719975 chr4:152304535 G>T
- Sequence
tactgctgctttgggagttagggg[G/T]tttttttagtgattcatttgtagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ARNT_HUMAN SKIL_HUMAN RELB_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 3.94 | -3.63 | 1.00 | n/a | No Hit | |||
| SKIL_HUMAN | 3.50 | n/a | 1.00 | n/a | n/a | |||
| RELB_HUMAN | 3.10 | -2.96 | 1.25 | -1.30 | Weak Concordant | |||
| STAG1_HUMAN | 2.98 | n/a | 1.00 | n/a | n/a | |||
| ZN687_HUMAN | 2.63 | -2.29 | 1.00 | n/a | n/a |
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Motif analysis
