rs72724724 chr4:139099444 G>A
- Sequence
acagtgtggaaacattaagcaaac[G/A]agcacaaatataaatatagtcaag
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma) prostate cancer
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.20 | 2.33 | 1.71 | 1.99 | Weak Concordant | |||
| FOXA1_HUMAN | -0.20 | 2.45 | 1.83 | 5.49 | Concordant | |||
| A2NVP9_HUMAN | -0.81 | 2.08 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg