rs72729610 chr4:153269813 A>G
- Sequence
ggcgaacatgtgaggattttattg[A/G]tttacaaaataaacaacagggagc
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN MBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.46 | 0.94 | 2.09 | -0.54 | Weak Discordant | |||
| MBL2_HUMAN | -0.20 | 1.97 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
EMBL-EBI hdl cholesterol levels in current drinkers, hdl cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df), hdl cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df), ldl cholesterol levels, ldl cholesterol levels in current drinkers, ldl cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df), ldl cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)