rs72733420 chr15:40368365 G>A
- Sequence
ccaccccttcgagcgcttcgacgc[G/A]gagtatcgccagctgttcctgttc
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP C4-2B (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- TCF21_HUMAN TIF1B_HUMAN FLI1_HUMAN SRF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 1.77 | n/a | 3.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 2.84 | 0.08 | 1.67 | n/a | n/a | |||
| FLI1_HUMAN | -0.80 | 1.48 | 1.33 | n/a | No Hit | |||
| SRF_HUMAN | 1.29 | -0.58 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood