rs72742295 chr15:55358079 T>C
- Sequence
ccctaagataaggattaaggatga[T/C]taagtaacttaataatgaccccaa
- ASB in cell types
- CFPAC-1(pancreatic ductal adenocarcinoma) HASM2 (Human airway smooth muscle 2) primary endothelial colony-forming cells
- ASB for transcription factors
- FOXA2_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.35 | 2.52 | 1.06 | n/a | No Hit | |||
| TAL1_HUMAN | -0.54 | 1.42 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Thyroid, Whole_Blood