rs72744254 chr9:105447915 G>T
- Sequence
ggggaagggagtgcagcctgcaga[G/T]gcactagcggtagacagacgggcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line) glioblastoma cells CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.05 | 2.41 | 1.79 | n/a | No Hit | |||
| STAG1_HUMAN | -0.65 | 2.59 | 1.17 | n/a | n/a | |||
| STAT1_HUMAN | 2.69 | -0.36 | 1.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis