rs72755909 chr1:224205509 C>A

Sequence
actggccacatgaaatcaggtttt[C/A]aaaacggaactgcctgtgaggatg
ASB in cell types
THP-1 (acute monocytic leukemia) breast tumor GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
SPI1_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 0.07 2.46 1.001.6·10-17 1.77 n/a No Hit
ESR1_HUMAN 1.97 0.01 0.021.00 1.88 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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