rs72757619 chr15:64835912 C>G
- Sequence
tcggcttcgggcggttctgggcat[C/G]cgcccgacactctgctccctgctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN ANDR_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.81 | -2.58 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.98 | -1.65 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood