rs72759889 chr9:131732167 C>T
- Sequence
tgcaccccagccctagacagcaca[C/T]gctgcacagtcatcctgggaaaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | -3.39 | 3.64 | 1.00 | 3.61 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg