rs72775928 chr10:11874824 T>C
- Sequence
tggacaagccctgctttcaaatag[T/C]tgaggaaagaagacagagctgcaa
- ASB in cell types
- 22RV1 (prostate carcinoma) CTV-1 (Adult T acute lymphoblastic leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- ANDR_HUMAN ETS1_HUMAN ESR1_HUMAN USF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.13 | -1.87 | 2.00 | 0.28 | Weak Discordant | |||
| ETS1_HUMAN | 2.23 | -0.60 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.93 | 0.09 | 1.40 | n/a | No Hit | |||
| USF2_HUMAN | 1.52 | 2.50 | 1.75 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid