rs72779445 chr2:10817581 G>C
- Sequence
cacacttcaccacacagctccccc[G/C]gtgggcgcccaaggccttgccaat
- ASB in cell types
- WA01 (H1, human embryonic stem cells) neural cell RWPE2 epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.23 | 1.23 | 0.06 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Nucleus_accumbens_basal_ganglia, Muscle_Skeletal, Prostate, Skin_Sun_Exposed_Lower_leg