rs72788135 chr2:29015312 T>G
- Sequence
ccaccccacttctgcgctccctcc[T/G]gtggccacatcgtaggccttggca
- ASB in cell types
- pancreas
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.13 | 0.52 | 1.33 | 1.56 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Mucosa, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Stomach, Whole_Blood